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Table 1 REase targets for gene inactivation in Vibrio sp. dhg

From: Development of a CRISPR-based cytosine base editor for restriction-modification system inactivation to enhance transformation efficiency in Vibrio Sp. dhg

 

Target label

Locus

Namea, b

Predicted source

Stop

codon

RE1

RE0-1

DBX26_01795

hsdR type I restriction enzyme R subunita

REBASE, eggNOG, RAST

W139*

RE0-2

DBX26_01820

mrr restriction endonucleasea

REBASE, eggNOG, RAST

W104*

RE0-3

DBX26_11820

hsdR type I restriction enzyme R subunita

REBASE, eggNOG, RAST

R21*

RE0-4

DBX26_25330

BsuBI, PstI restriction endonucleasea

REBASE, NCBI, eggNOG, RAST

W259*

RE2

RE0-5

DBX26_05280

restriction endonucleasea

NCBI, eggNOG, RAST

Q146*

RE0-6

DBX26_11465

hsdR type I restriction enzyme R subunita

eggNOG, RAST

Q62*

RE0-7

DBX26_25295

type III restriction-modification endonucleaseb

NCBI

Q153*

  1. aName was given according to eggNOG, RAST database annotation
  2. bName was given according to NCBI database annotation